Variant report

Variant	rs4461609
Chromosome Location	chr5:35478774-35478775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35229573..35231662-chr5:35476053..35479431,4	MCF-7	breast:
2	chr5:35478172..35480721-chr5:35482936..35485324,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113494	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11750298	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953352	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13177312	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13181071	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1508658	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16902130	0.81[ASN][1000 genomes]
rs2036676	0.82[ASN][1000 genomes]
rs2397843	0.82[ASN][1000 genomes]
rs284742	0.81[ASN][1000 genomes]
rs284743	0.81[ASN][1000 genomes]
rs284744	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs284746	0.81[ASN][1000 genomes]
rs284747	0.84[ASN][1000 genomes]
rs284748	0.81[ASN][1000 genomes]
rs284749	0.84[ASN][1000 genomes]
rs284750	0.84[ASN][1000 genomes]
rs284751	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs284752	0.81[ASN][1000 genomes]
rs284753	0.81[ASN][1000 genomes]
rs284754	0.82[ASN][1000 genomes]
rs284755	0.82[ASN][1000 genomes]
rs284756	0.82[ASN][1000 genomes]
rs284757	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs284758	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284759	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs284760	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs284762	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284764	0.82[ASN][1000 genomes]
rs284765	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284766	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018541	chr5:35446209-35491185	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030395	chr5:35446516-35491185	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35469200-35479400	Weak transcription	Pancreas	Pancrea
2	chr5:35475400-35480400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:35476200-35479000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:35476400-35479000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:35477000-35479000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr5:35477200-35479200	Weak transcription	Colon Smooth Muscle	Colon
7	chr5:35477200-35479400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr5:35477800-35479000	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr5:35478000-35479200	Weak transcription	Fetal Kidney	kidney
10	chr5:35478000-35479200	Enhancers	NHDF-Ad	bronchial
11	chr5:35478200-35479400	Enhancers	HepG2	liver
12	chr5:35478400-35479400	Weak transcription	Small Intestine	intestine
13	chr5:35478400-35482400	Weak transcription	Ovary	ovary
14	chr5:35478600-35479000	Enhancers	Dnd41	blood

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