Variant report

Variant	rs16902130
Chromosome Location	chr5:35471362-35471363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35463039..35464733-chr5:35469532..35472198,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10041120	0.82[CEU][hapmap];0.82[CHB][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10044118	0.85[EUR][1000 genomes]
rs10044161	0.85[EUR][1000 genomes]
rs11750298	0.81[ASN][1000 genomes]
rs1508659	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1559274	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1559275	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17618846	0.91[EUR][1000 genomes]
rs2036676	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2397843	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs26198	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs26199	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs26201	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs26203	0.82[CHB][hapmap]
rs26204	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs27762	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs27940	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28020	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs284692	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs284695	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs284742	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284743	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284744	0.82[ASN][1000 genomes]
rs284746	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284747	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs284748	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284749	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs284750	0.96[ASN][1000 genomes]
rs284751	0.83[ASN][1000 genomes]
rs284752	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs284753	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs284754	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs284755	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs284756	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs284758	0.81[ASN][1000 genomes]
rs284762	0.81[ASN][1000 genomes]
rs284764	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs284765	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs284766	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs284767	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs284770	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs32733	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs32754	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs32758	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs32789	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs32790	0.82[CHB][hapmap]
rs4461609	0.81[ASN][1000 genomes]
rs457255	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4703401	0.85[EUR][1000 genomes]
rs58530298	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6451200	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6865370	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6872931	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7705697	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018541	chr5:35446209-35491185	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030395	chr5:35446516-35491185	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35468800-35471400	Enhancers	Placenta	Placenta
2	chr5:35469200-35479400	Weak transcription	Pancreas	Pancrea
3	chr5:35470400-35471600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr5:35470400-35471600	Enhancers	HepG2	liver
5	chr5:35470800-35471600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:35471000-35471400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:35471000-35475000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr5:35471200-35473200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:35471200-35475800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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