Variant report

Variant	rs1559274
Chromosome Location	chr5:35465733-35465734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10041120	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10044118	0.92[EUR][1000 genomes]
rs10044161	0.92[EUR][1000 genomes]
rs1508659	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1559275	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16902130	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2036676	1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2397843	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs26198	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs26199	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs26201	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs26203	0.85[CEU][hapmap]
rs26204	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs27762	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs27940	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28020	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs284692	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs284695	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs284742	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs284743	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs284746	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs284748	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs284752	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs284753	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs284754	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs284755	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs284756	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs284764	0.85[AMR][1000 genomes]
rs284766	0.82[CEU][hapmap];0.81[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs284767	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs284768	0.85[CEU][hapmap]
rs284770	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs32733	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs32754	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs32758	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs32789	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs32790	0.85[CEU][hapmap]
rs457255	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4703401	0.92[EUR][1000 genomes]
rs58530298	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6451200	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6865370	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6872931	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7705697	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018541	chr5:35446209-35491185	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030395	chr5:35446516-35491185	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35464400-35468000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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