Variant report

Variant	rs28020
Chromosome Location	chr5:35417842-35417843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10041120	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10044118	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10044161	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1508659	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1508660	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1559274	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1559275	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1605689	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16902130	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17618846	0.86[EUR][1000 genomes]
rs2036676	0.85[EUR][1000 genomes]
rs2397843	0.85[EUR][1000 genomes]
rs26197	0.96[ASN][1000 genomes]
rs26198	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs26199	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs26200	0.96[ASN][1000 genomes]
rs26201	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs26203	0.85[CEU][hapmap];0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs26204	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs26205	0.91[ASN][1000 genomes]
rs27487	0.88[ASN][1000 genomes]
rs27762	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs27940	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284692	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs284693	0.95[ASN][1000 genomes]
rs284694	0.95[ASN][1000 genomes]
rs284695	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs284697	0.86[ASN][1000 genomes]
rs284698	0.90[ASN][1000 genomes]
rs284742	0.85[EUR][1000 genomes]
rs284743	0.85[EUR][1000 genomes]
rs284746	0.85[EUR][1000 genomes]
rs284748	0.85[EUR][1000 genomes]
rs284752	0.85[EUR][1000 genomes]
rs284753	0.85[EUR][1000 genomes]
rs284754	0.85[EUR][1000 genomes]
rs284755	0.85[EUR][1000 genomes]
rs284756	0.85[EUR][1000 genomes]
rs284766	0.82[CEU][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs284767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs284768	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs284770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs32733	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs32754	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs32755	0.95[ASN][1000 genomes]
rs32758	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs32789	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs32790	0.85[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs32791	0.88[ASN][1000 genomes]
rs39981	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs457255	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4703362	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4703363	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4703401	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4703402	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58530298	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6451200	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6865370	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6872931	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6897316	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35416400-35418200	Enhancers	HepG2	liver
2	chr5:35416800-35418000	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr5:35416800-35418200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr5:35416800-35418400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:35417000-35418400	Enhancers	Liver	Liver
6	chr5:35417600-35418200	Enhancers	Primary monocytes fromperipheralblood	blood

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