Variant report

Variant	rs26200
Chromosome Location	chr5:35419853-35419854
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10041120	0.85[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs10044118	0.86[ASN][1000 genomes]
rs10044161	0.86[ASN][1000 genomes]
rs1508659	0.85[ASN][1000 genomes]
rs1508660	0.90[ASN][1000 genomes]
rs1605689	0.90[ASN][1000 genomes]
rs26197	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs26198	0.96[ASN][1000 genomes]
rs26199	0.96[ASN][1000 genomes]
rs26201	0.96[ASN][1000 genomes]
rs26203	0.82[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs26204	0.88[ASN][1000 genomes]
rs26205	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs27487	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs27762	0.96[ASN][1000 genomes]
rs27940	0.96[ASN][1000 genomes]
rs28020	0.96[ASN][1000 genomes]
rs284692	0.95[ASN][1000 genomes]
rs284693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs284694	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs284695	0.95[ASN][1000 genomes]
rs284697	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs284698	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs284750	0.85[EUR][1000 genomes]
rs284767	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs284768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs284770	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs32733	0.88[ASN][1000 genomes]
rs32754	0.95[ASN][1000 genomes]
rs32755	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs32758	0.96[ASN][1000 genomes]
rs32789	0.93[ASN][1000 genomes]
rs32790	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs32791	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs39981	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs457255	0.95[ASN][1000 genomes]
rs4703362	0.90[ASN][1000 genomes]
rs4703363	0.90[ASN][1000 genomes]
rs4703401	0.86[ASN][1000 genomes]
rs4703402	0.90[ASN][1000 genomes]
rs58530298	0.85[ASN][1000 genomes]
rs6451200	0.85[ASN][1000 genomes]
rs6865370	0.88[ASN][1000 genomes]
rs6897316	0.90[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs26200	EGR2	trans	parietal	SCAN
rs26200	TYMP	trans	brain	seeQTL
rs26200	PRLR	cis	cerebellum	SCAN
rs26200	GDNF	cis	cerebellum	SCAN
rs26200	C5orf22	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35418400-35420200	Weak transcription	Liver	Liver
2	chr5:35419200-35422000	Enhancers	HepG2	liver

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