Variant report

Variant	rs771470
Chromosome Location	chr1:93858826-93858827
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1081522	0.84[ASN][1000 genomes]
rs10874766	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11164896	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11164905	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12027142	0.82[EUR][1000 genomes]
rs12033147	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12036057	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12045001	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12046063	0.82[EUR][1000 genomes]
rs12563709	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1365297	0.86[ASN][1000 genomes]
rs3087457	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35628716	0.81[ASN][1000 genomes]
rs4847425	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61799517	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61799538	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs698927	0.81[ASN][1000 genomes]
rs771454	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs771458	0.81[ASN][1000 genomes]
rs771461	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs771462	0.81[ASN][1000 genomes]
rs771465	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs771476	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs771478	0.84[ASN][1000 genomes]
rs771479	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs771481	0.84[ASN][1000 genomes]
rs771482	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs810027	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs812214	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs771470	DR1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93853200-93866000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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