The 2.0 version of rSNPBase

Variant report

Variant rs61799538
Chromosome Location chr1:93806698-93806699
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:93765800-93809800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
2 chr1:93789200-93810200 Weak transcription Esophagus oesophagus
3 chr1:93790800-93810000 Weak transcription Fetal Intestine Small intestine
4 chr1:93794400-93810600 Weak transcription Fetal Brain Male brain
5 chr1:93795000-93810600 Weak transcription Fetal Brain Female brain
6 chr1:93797200-93810600 Weak transcription Pancreatic Islets Pancreatic Islet
7 chr1:93799000-93810600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
8 chr1:93800400-93810200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
9 chr1:93801400-93810600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
10 chr1:93801800-93808600 Weak transcription Fetal Heart heart
11 chr1:93801800-93810600 Weak transcription Brain Germinal Matrix brain
12 chr1:93802200-93810600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
13 chr1:93802400-93810200 Weak transcription Cortex derived primary cultured neurospheres brain
14 chr1:93802600-93811000 Weak transcription Spleen Spleen
15 chr1:93803400-93810600 Weak transcription Skeletal Muscle Male skeletal muscle
16 chr1:93804200-93810800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr1:93804600-93810000 Weak transcription Placenta Amnion Placenta Amnion
18 chr1:93804800-93806800 Enhancers Hela-S3 cervix
19 chr1:93804800-93808400 Weak transcription Pancreas Pancrea
20 chr1:93804800-93809200 Weak transcription K562 blood
21 chr1:93804800-93810400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
22 chr1:93804800-93810400 Weak transcription Primary monocytes fromperipheralblood blood
23 chr1:93804800-93810400 Weak transcription Stomach Smooth Muscle stomach
24 chr1:93804800-93810400 Weak transcription NHLF lung
25 chr1:93804800-93810600 Weak transcription Rectal Mucosa Donor 29 rectum
26 chr1:93804800-93810800 Weak transcription Aorta Aorta
27 chr1:93804800-93810800 Weak transcription Sigmoid Colon Sigmoid Colon
28 chr1:93805000-93806800 Enhancers Muscle Satellite Cultured Cells --
29 chr1:93805000-93808400 Weak transcription GM12878-XiMat blood
30 chr1:93805000-93808400 Weak transcription NHDF-Ad bronchial
31 chr1:93805000-93809800 Weak transcription Primary B cells from peripheral blood blood
32 chr1:93805000-93809800 Weak transcription Skeletal Muscle Female skeletal muscle
33 chr1:93805000-93810000 Weak transcription Primary neutrophils fromperipheralblood blood
34 chr1:93805000-93810000 Weak transcription Fetal Lung lung
35 chr1:93805000-93810000 Weak transcription Rectal Mucosa Donor 31 rectum
36 chr1:93805000-93810200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
37 chr1:93805000-93810200 Weak transcription Liver Liver
38 chr1:93805000-93810200 Weak transcription Placenta Placenta
39 chr1:93805000-93810400 Weak transcription Adipose Nuclei Adipose
40 chr1:93805000-93810400 Weak transcription Lung lung
41 chr1:93805000-93810400 Weak transcription HSMMtube muscle
42 chr1:93805000-93810600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
43 chr1:93805000-93810600 Weak transcription Brain Angular Gyrus brain
44 chr1:93805000-93810600 Weak transcription Brain Cingulate Gyrus brain
45 chr1:93805000-93810600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
46 chr1:93805000-93810600 Weak transcription Duodenum Mucosa Duodenum
47 chr1:93805000-93810600 Weak transcription Fetal Kidney kidney
48 chr1:93805000-93810600 Weak transcription Fetal Stomach stomach
49 chr1:93805000-93810600 Weak transcription Ovary ovary
50 chr1:93805200-93809200 Weak transcription Primary T regulatory cells fromperipheralblood blood

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Last update: Aug 31, 2015