Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11164896	0.83[EUR][1000 genomes]
rs11164905	0.81[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11164939	0.80[CEU][hapmap]
rs12033147	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12036057	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12045001	0.83[EUR][1000 genomes]
rs12563709	0.83[EUR][1000 genomes]
rs1426317	1.00[YRI][hapmap]
rs17109958	0.90[CEU][hapmap]
rs237437	1.00[YRI][hapmap]
rs2449376	1.00[YRI][hapmap]
rs2818971	1.00[YRI][hapmap]
rs3087457	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3767966	0.89[CEU][hapmap]
rs3904666	1.00[CEU][hapmap]
rs4847242	0.84[CHB][hapmap]
rs61799517	0.83[EUR][1000 genomes]
rs61799538	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6541379	0.80[AMR][1000 genomes]
rs771454	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs771461	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs771465	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs771470	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs771476	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs771479	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs771482	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs810027	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3375834	chr1:93872980-93904647	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4847425	DR1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93873200-93874600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:93873200-93876000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr1:93873400-93875400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:93873400-93875600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:93873400-93876000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
6	chr1:93873400-93876200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr1:93873600-93874600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:93873600-93874600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
9	chr1:93873800-93874600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
10	chr1:93873800-93874600	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:93874000-93875600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

Quick Search: