Variant report

Variant	rs771476
Chromosome Location	chr1:93851864-93851865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr1:93851649-93852398	U2OS	brain:	n/a	n/a
2	TRIM28	chr1:93851819-93852238	K562	blood:	n/a	n/a
3	CBX3	chr1:93851825-93852215	K562	blood:	n/a	n/a
4	CBX3	chr1:93851825-93852149	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000229635	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1081522	0.87[ASN][1000 genomes]
rs10874766	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11164896	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11164905	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12027142	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12033147	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12036057	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12038046	0.80[EUR][1000 genomes]
rs12045001	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12046063	0.84[EUR][1000 genomes]
rs12563709	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1365297	0.85[ASN][1000 genomes]
rs2484486	0.80[EUR][1000 genomes]
rs2783505	0.80[EUR][1000 genomes]
rs28782525	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2893242	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3087457	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35628716	0.83[ASN][1000 genomes]
rs35910103	0.82[ASN][1000 genomes]
rs35915989	0.82[ASN][1000 genomes]
rs3904666	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4847425	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61799470	0.80[EUR][1000 genomes]
rs61799497	0.80[EUR][1000 genomes]
rs61799517	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61799538	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs698927	0.83[ASN][1000 genomes]
rs771454	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs771458	0.83[ASN][1000 genomes]
rs771461	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs771462	0.83[ASN][1000 genomes]
rs771465	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs771470	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs771478	0.87[ASN][1000 genomes]
rs771479	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs771481	0.87[ASN][1000 genomes]
rs771482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs810027	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs812214	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs771476	DR1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93840600-93852400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:93847200-93852000	Weak transcription	Aorta	Aorta
3	chr1:93850400-93852600	ZNF genes & repeats	Dnd41	blood

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