Variant report

Variant	rs7740816
Chromosome Location	chr6:147338268-147338269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1112833	0.81[AMR][1000 genomes]
rs1529016	0.82[JPT][hapmap]
rs1881665	0.82[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap]
rs4143745	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4896900	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4896901	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6570785	0.95[ASN][1000 genomes]
rs6909765	0.94[ASN][1000 genomes]
rs7741525	0.82[ASN][1000 genomes]
rs9386177	0.82[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap]
rs9399593	0.93[ASW][hapmap];0.81[GIH][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7740816	IYD	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147338200-147339200	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links