Variant report

Variant	rs6570785
Chromosome Location	chr6:147354068-147354069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1529015	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1529016	1.00[ASW][hapmap];0.83[GIH][hapmap];0.82[JPT][hapmap];0.88[LWK][hapmap];0.85[TSI][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1529017	0.83[CHB][hapmap]
rs1881665	0.82[JPT][hapmap]
rs4896900	0.94[ASN][1000 genomes]
rs4896902	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6570787	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6909765	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7740816	0.95[ASN][1000 genomes]
rs7753478	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7755338	0.81[YRI][hapmap]
rs7772651	0.95[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9386177	0.82[JPT][hapmap]
rs9399593	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147343800-147364800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:147353800-147354200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:147353800-147354200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:147353800-147354600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr6:147353800-147355400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:147353800-147355600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:147354000-147354600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:147354000-147355400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr6:147354000-147355400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:147354000-147355600	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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