Variant report

Variant	rs9386177
Chromosome Location	chr6:147318411-147318412
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147316468..147318660-chr6:147533860..147536236,2	K562	blood:
2	chr6:147318279..147319788-chr6:147321898..147324493,2	MCF-7	breast:
3	chr6:147316176..147319169-chr6:147524425..147526437,2	K562	blood:
4	chr6:147315835..147318626-chr6:147323386..147326215,2	K562	blood:

Variant related genes	Relation type
ENSG00000164506	Chromatin interaction
ENSG00000233452	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10457807	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12198271	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1529017	0.81[CEU][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs1881661	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1881663	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1881665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2181942	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs2328777	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4896898	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57624563	0.81[ASN][1000 genomes]
rs6570781	0.82[EUR][1000 genomes]
rs6570784	0.82[ASN][1000 genomes]
rs6570786	0.82[ASN][1000 genomes]
rs6902235	0.85[EUR][1000 genomes]
rs7741525	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7742698	0.82[ASN][1000 genomes]
rs7745042	0.84[CHB][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs7760482	0.82[ASN][1000 genomes]
rs7765767	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9322084	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9322085	0.82[EUR][1000 genomes]
rs9377040	0.96[CEU][hapmap];0.96[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9377042	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9390449	0.81[CEU][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs9403836	0.91[JPT][hapmap]
rs9485136	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9497675	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9497679	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147311400-147321200	Weak transcription	HSMM	muscle
2	chr6:147312600-147321000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:147313400-147320800	Weak transcription	K562	blood
4	chr6:147318000-147318600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:147318000-147318600	Enhancers	A549	lung
6	chr6:147318000-147318600	Enhancers	NH-A	brain
7	chr6:147318000-147318600	Enhancers	NHLF	lung
8	chr6:147318000-147318600	Enhancers	Osteobl	bone
9	chr6:147318000-147318800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:147318000-147318800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:147318000-147318800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:147318200-147318600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:147318200-147318600	Enhancers	NHDF-Ad	bronchial
14	chr6:147318200-147318800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:147318200-147318800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:147318400-147318600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr6:147318400-147318600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:147318400-147318600	Enhancers	HSMMtube	muscle
19	chr6:147318400-147318800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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