Variant report

Variant	rs7742698
Chromosome Location	chr6:147354315-147354316
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1529017	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1881665	0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs57624563	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6570784	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570786	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741525	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7760482	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765767	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9377040	0.82[ASN][1000 genomes]
rs9377042	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9386177	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs9390449	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147343800-147364800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:147353800-147354600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr6:147353800-147355400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:147353800-147355600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:147354000-147354600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:147354000-147355400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr6:147354000-147355400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:147354000-147355600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:147354200-147354400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr6:147354200-147354400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:147354200-147354600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr6:147354200-147354800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:147354200-147354800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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