Variant report

Variant	rs9377042
Chromosome Location	chr6:147345130-147345131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147333617..147335216-chr6:147343494..147346443,2	K562	blood:
2	chr6:147344369..147346312-chr6:147524110..147526434,2	K562	blood:
3	chr6:147343648..147348128-chr6:147350365..147353896,5	K562	blood:
4	chr6:147344718..147347509-chr6:147347672..147349571,2	K562	blood:
5	chr6:147343549..147345670-chr6:147523671..147526894,3	K562	blood:
6	chr6:147341916..147343656-chr6:147344414..147345971,2	K562	blood:
7	chr6:147344651..147346645-chr6:147362957..147365014,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1529017	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1881665	0.83[EUR][1000 genomes]
rs57624563	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6570784	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6570786	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7741525	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7742698	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7760482	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7765767	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9377040	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9386177	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9390449	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147343800-147364800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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