Variant report

Variant	rs9377040
Chromosome Location	chr6:147317000-147317001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147312426..147314178-chr6:147315717..147317793,2	K562	blood:
2	chr6:147316468..147318660-chr6:147533860..147536236,2	K562	blood:
3	chr6:147312045..147314178-chr6:147315650..147317217,2	K562	blood:
4	chr6:147316757..147318385-chr6:147332392..147334165,2	K562	blood:
5	chr6:147316176..147319169-chr6:147524425..147526437,2	K562	blood:
6	chr6:147315835..147318626-chr6:147323386..147326215,2	K562	blood:

Variant related genes	Relation type
ENSG00000233452	Chromatin interaction
ENSG00000164506	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10457807	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12198271	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1529016	0.82[JPT][hapmap]
rs1529017	0.82[ASN][1000 genomes]
rs1529020	0.83[AMR][1000 genomes]
rs1881661	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1881663	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1881665	0.96[CEU][hapmap];0.96[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2328775	0.83[AMR][1000 genomes]
rs2328777	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4563735	0.80[AMR][1000 genomes]
rs4895706	0.91[JPT][hapmap]
rs4896898	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57624563	0.81[ASN][1000 genomes]
rs6570781	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6570784	0.82[ASN][1000 genomes]
rs6570786	0.82[ASN][1000 genomes]
rs6902235	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7741525	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7742698	0.82[ASN][1000 genomes]
rs7745042	0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7760482	0.82[ASN][1000 genomes]
rs7765767	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7775644	0.82[AMR][1000 genomes]
rs9322084	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9322085	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9377042	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9386177	0.96[CEU][hapmap];0.96[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9390447	0.83[AMR][1000 genomes]
rs9390449	0.81[ASN][1000 genomes]
rs9399592	0.91[JPT][hapmap]
rs9399593	0.82[JPT][hapmap]
rs9403836	0.83[JPT][hapmap]
rs9485136	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9497675	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9497678	0.83[AMR][1000 genomes]
rs9497679	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147311400-147321200	Weak transcription	HSMM	muscle
2	chr6:147311800-147318000	Weak transcription	NHLF	lung
3	chr6:147312600-147318000	Weak transcription	NH-A	brain
4	chr6:147312600-147318400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:147312600-147321000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:147312800-147318000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:147312800-147318200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:147313000-147318000	Weak transcription	Osteobl	bone
9	chr6:147313400-147318000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:147313400-147318000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:147313400-147318200	Weak transcription	NHDF-Ad	bronchial
12	chr6:147313400-147320800	Weak transcription	K562	blood
13	chr6:147313600-147318000	Weak transcription	A549	lung
14	chr6:147313800-147318400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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