Variant report

Variant	rs9390447
Chromosome Location	chr6:147308144-147308145
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147306108..147308277-chr6:147522846..147526447,3	MCF-7	breast:
2	chr6:147295557..147298102-chr6:147307157..147308890,2	K562	blood:

Variant related genes	Relation type
ENSG00000233452	Chromatin interaction
ENSG00000164506	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10457807	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12198271	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1529020	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1881661	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1881663	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2049753	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2049754	0.81[ASN][1000 genomes]
rs2328775	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2328777	0.82[EUR][1000 genomes]
rs4563735	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6570781	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6902235	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7741525	0.85[AMR][1000 genomes]
rs7745042	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7765767	0.83[AMR][1000 genomes]
rs7775644	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9322084	0.83[EUR][1000 genomes]
rs9322085	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9377040	0.83[AMR][1000 genomes]
rs9485136	0.83[EUR][1000 genomes]
rs9497675	0.83[EUR][1000 genomes]
rs9497678	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9497679	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147305800-147311000	Weak transcription	Fetal Heart	heart
2	chr6:147306000-147311200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:147306200-147310600	Weak transcription	HSMMtube	muscle
4	chr6:147306400-147310200	Weak transcription	Hela-S3	cervix
5	chr6:147306600-147310200	Weak transcription	A549	lung
6	chr6:147306600-147310600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr6:147306600-147311400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:147306600-147311400	Weak transcription	K562	blood
9	chr6:147307400-147310200	Weak transcription	HepG2	liver

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