Variant report

Variant	rs2328777
Chromosome Location	chr6:147304897-147304898
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147303393..147305875-chr6:147310244..147312438,2	K562	blood:
2	chr6:147234520..147236599-chr6:147304755..147307670,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10457807	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12198271	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12199143	0.81[ASN][1000 genomes]
rs12203394	0.82[ASN][1000 genomes]
rs1406538	0.82[ASN][1000 genomes]
rs1529017	0.81[CEU][hapmap];0.91[JPT][hapmap]
rs1529020	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1881661	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1881663	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1881665	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2181942	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs2328775	0.84[EUR][1000 genomes]
rs34746293	0.81[ASN][1000 genomes]
rs4563735	0.82[EUR][1000 genomes]
rs4605904	0.82[ASN][1000 genomes]
rs4609047	0.81[ASN][1000 genomes]
rs4896898	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5022638	0.82[ASN][1000 genomes]
rs6570781	0.80[EUR][1000 genomes]
rs6911913	0.81[ASN][1000 genomes]
rs6936461	0.81[ASN][1000 genomes]
rs6936487	0.81[ASN][1000 genomes]
rs7738320	0.87[YRI][hapmap]
rs7741525	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7745042	0.82[JPT][hapmap]
rs7765767	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7774249	0.82[ASN][1000 genomes]
rs7774926	0.82[ASN][1000 genomes]
rs7775644	0.85[EUR][1000 genomes]
rs9322084	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9322085	0.80[EUR][1000 genomes]
rs9373518	0.81[ASN][1000 genomes]
rs9377040	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9386177	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9390445	0.81[ASN][1000 genomes]
rs9390447	0.82[EUR][1000 genomes]
rs9390449	0.81[CEU][hapmap];0.91[JPT][hapmap]
rs9403836	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs9485136	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9497671	0.81[ASN][1000 genomes]
rs9497672	0.81[ASN][1000 genomes]
rs9497673	0.81[ASN][1000 genomes]
rs9497674	0.81[ASN][1000 genomes]
rs9497675	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9497678	0.85[EUR][1000 genomes]
rs9497679	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9766272	0.81[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147301200-147305400	Enhancers	HepG2	liver
2	chr6:147302200-147305800	Weak transcription	Fetal Intestine Small	intestine
3	chr6:147303200-147305400	Weak transcription	Hela-S3	cervix
4	chr6:147303400-147305600	Weak transcription	K562	blood
5	chr6:147303400-147306000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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