Variant report

Variant	rs12199143
Chromosome Location	chr6:147278057-147278058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147223899..147226748-chr6:147275966..147278820,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10457807	0.81[ASN][1000 genomes]
rs11155493	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11155494	0.81[AMR][1000 genomes]
rs12198271	0.81[ASN][1000 genomes]
rs12203394	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12209913	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12662569	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1406538	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1529014	0.82[AMR][1000 genomes]
rs1529021	0.80[AMR][1000 genomes]
rs1881661	0.81[ASN][1000 genomes]
rs1881662	0.82[AMR][1000 genomes]
rs1881663	0.82[ASN][1000 genomes]
rs1881665	0.80[ASN][1000 genomes]
rs2181942	0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2328774	0.82[AMR][1000 genomes]
rs2328777	0.81[ASN][1000 genomes]
rs34746293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4323329	0.83[AMR][1000 genomes]
rs4452660	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4551178	0.84[EUR][1000 genomes]
rs4605904	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4609047	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4895706	0.81[AMR][1000 genomes]
rs4896897	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5022638	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6911913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913861	0.80[AMR][1000 genomes]
rs6936461	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6936487	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7742400	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7774249	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7774926	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9322081	0.87[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9322084	0.81[ASN][1000 genomes]
rs9373516	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9373518	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9377038	0.82[AMR][1000 genomes]
rs9386176	0.82[EUR][1000 genomes]
rs9390445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399592	0.82[EUR][1000 genomes]
rs9403831	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9403832	0.80[AMR][1000 genomes]
rs9403834	0.81[AMR][1000 genomes]
rs9403836	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9485136	0.81[ASN][1000 genomes]
rs9497671	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9497672	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9497673	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9497674	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9497679	0.81[ASN][1000 genomes]
rs9766272	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3327307	chr6:147277828-147278366	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147277600-147278800	Enhancers	Fetal Brain Male	brain
2	chr6:147277800-147279000	Enhancers	Pancreatic Islets	Pancreatic Islet

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