Variant report

Variant	rs5022638
Chromosome Location	chr6:147288976-147288977
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147288556..147291146-chr6:147291708..147294390,3	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10457807	0.82[ASN][1000 genomes]
rs11155493	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12198271	0.82[ASN][1000 genomes]
rs12199143	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12203394	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12209913	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12662569	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1406538	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1529017	0.81[JPT][hapmap]
rs1881661	0.82[ASN][1000 genomes]
rs1881663	0.82[ASN][1000 genomes]
rs1881665	0.86[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2181942	0.92[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2328777	0.82[ASN][1000 genomes]
rs34746293	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4445078	0.84[AMR][1000 genomes]
rs4551178	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4605904	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4609047	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4895706	0.83[JPT][hapmap]
rs4896897	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6911913	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6936461	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6936487	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7742400	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7765767	0.81[ASN][1000 genomes]
rs7774249	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7774926	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7775043	0.88[CEU][hapmap]
rs9322081	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs9322084	0.82[ASN][1000 genomes]
rs9373516	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9373518	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9377040	0.82[CHB][hapmap]
rs9386176	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9386177	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs9390445	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9390449	0.81[JPT][hapmap]
rs9399592	0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9403831	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9403836	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9485136	0.82[ASN][1000 genomes]
rs9497671	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9497672	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9497673	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9497674	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9497679	0.82[ASN][1000 genomes]
rs9766272	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147288200-147289000	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:147288200-147291000	Enhancers	Fetal Heart	heart
3	chr6:147288600-147289200	Enhancers	Hela-S3	cervix
4	chr6:147288600-147289400	Enhancers	Colon Smooth Muscle	Colon
5	chr6:147288600-147289800	Enhancers	Osteobl	bone
6	chr6:147288600-147290000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:147288600-147290200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:147288800-147289200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:147288800-147289200	Enhancers	HSMMtube	muscle
10	chr6:147288800-147289400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:147288800-147289400	Enhancers	NH-A	brain
12	chr6:147288800-147289800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:147288800-147289800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:147288800-147289800	Enhancers	NHDF-Ad	bronchial

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