Variant report

Variant	rs9399592
Chromosome Location	chr6:147270712-147270713
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147232441..147234429-chr6:147269926..147271977,2	K562	blood:
2	chr6:147270092..147272159-chr6:147273623..147276207,2	K562	blood:
3	chr6:147195935..147198444-chr6:147269151..147270925,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SHPRH-7	chr6:147269664-147270876	ENSG00000272397.1

Variant related genes	Relation type
ENSG00000233452	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11155492	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11155494	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12199143	0.82[EUR][1000 genomes]
rs12203394	0.82[EUR][1000 genomes]
rs12209913	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12662569	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1406538	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1408577	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1529014	0.89[EUR][1000 genomes]
rs1529021	0.86[EUR][1000 genomes]
rs1881662	0.88[EUR][1000 genomes]
rs2181942	0.82[JPT][hapmap]
rs2328774	0.89[EUR][1000 genomes]
rs34746293	0.82[EUR][1000 genomes]
rs4267966	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4323329	0.88[EUR][1000 genomes]
rs4431452	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4445078	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4452660	0.89[EUR][1000 genomes]
rs4551178	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4605904	0.83[EUR][1000 genomes]
rs4609047	0.82[EUR][1000 genomes]
rs4895706	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5022638	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6911913	0.82[EUR][1000 genomes]
rs6913861	0.88[EUR][1000 genomes]
rs6936461	0.81[EUR][1000 genomes]
rs6936487	0.81[EUR][1000 genomes]
rs7742400	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7742886	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7745042	0.91[JPT][hapmap]
rs7774249	0.83[EUR][1000 genomes]
rs7774926	0.82[EUR][1000 genomes]
rs7775644	0.81[ASN][1000 genomes]
rs9322082	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9373516	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9373518	0.82[EUR][1000 genomes]
rs9377038	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9377040	0.91[JPT][hapmap]
rs9386176	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9390445	0.82[EUR][1000 genomes]
rs9403831	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9403832	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9403834	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403836	0.82[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9497671	0.82[EUR][1000 genomes]
rs9497672	0.81[EUR][1000 genomes]
rs9497673	0.81[EUR][1000 genomes]
rs9497674	0.81[EUR][1000 genomes]
rs9766272	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv1846046	chr6:147258908-147271295	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147265600-147276600	Weak transcription	Pancreas	Pancrea
2	chr6:147267400-147271600	Weak transcription	Small Intestine	intestine
3	chr6:147268000-147271000	Weak transcription	HepG2	liver
4	chr6:147268800-147277800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:147269200-147270800	Weak transcription	K562	blood
6	chr6:147270400-147271200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:147270400-147271600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:147270400-147272600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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