Variant report

Variant	rs1408577
Chromosome Location	chr6:147267127-147267128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147238517..147240324-chr6:147265571..147267356,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11155492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11155493	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11155494	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1529014	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1529021	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1881662	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2181942	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2328774	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4267966	0.93[EUR][1000 genomes]
rs4323329	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4431452	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4445078	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4452660	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4551178	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4609047	0.81[AMR][1000 genomes]
rs4895706	1.00[CEU][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4896897	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6913861	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7742400	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7742886	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9322081	0.82[CHB][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9322082	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9377038	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9386176	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9399592	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9403832	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9403834	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9403836	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv2760996	chr6:147229457-147269633	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv1846046	chr6:147258908-147271295	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147265600-147276600	Weak transcription	Pancreas	Pancrea
2	chr6:147266200-147268000	Enhancers	HepG2	liver
3	chr6:147266400-147268800	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr6:147266800-147268000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:147267000-147267400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:147267000-147267400	Enhancers	Small Intestine	intestine

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