Variant report

Variant	rs9377038
Chromosome Location	chr6:147281934-147281935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147272009..147274564-chr6:147278363..147282178,4	K562	blood:
2	chr6:147279074..147280912-chr6:147281371..147282956,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272397	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11155492	0.96[CEU][hapmap];0.89[CHB][hapmap];0.98[GIH][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11155493	0.85[AMR][1000 genomes]
rs11155494	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12199143	0.82[AMR][1000 genomes]
rs12203394	0.83[AMR][1000 genomes]
rs1408577	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1529013	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1529014	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1529021	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1881662	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2181942	0.85[AMR][1000 genomes]
rs2328774	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34746293	0.82[AMR][1000 genomes]
rs4267966	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4323329	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4431452	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4445078	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4452660	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4551178	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4605904	0.82[AMR][1000 genomes]
rs4609047	0.82[AMR][1000 genomes]
rs4895706	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4896897	0.84[AMR][1000 genomes]
rs6911913	0.82[AMR][1000 genomes]
rs6913861	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936461	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6936487	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7742400	0.80[AMR][1000 genomes]
rs7742886	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7774249	0.83[AMR][1000 genomes]
rs7774926	0.83[AMR][1000 genomes]
rs9322081	0.86[AMR][1000 genomes]
rs9322082	0.96[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9373518	0.82[AMR][1000 genomes]
rs9386176	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9390445	0.82[AMR][1000 genomes]
rs9399592	0.92[CEU][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9403832	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9403834	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9497671	0.83[AMR][1000 genomes]
rs9497672	0.84[AMR][1000 genomes]
rs9497673	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9497674	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9766272	0.82[AMR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9377038	STXBP5	cis	cerebellum	SCAN
rs9377038	ULBP3	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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