Variant report

Variant	rs1529021
Chromosome Location	chr6:147287839-147287840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11155492	0.94[ASW][hapmap];0.96[CEU][hapmap];0.84[CHB][hapmap];0.95[GIH][hapmap];0.91[LWK][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11155493	0.84[AMR][1000 genomes]
rs11155494	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12199143	0.80[AMR][1000 genomes]
rs1408577	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1529013	0.83[AMR][1000 genomes]
rs1529014	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1881662	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2181942	0.82[AMR][1000 genomes]
rs2328774	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34746293	0.80[AMR][1000 genomes]
rs4267966	0.90[EUR][1000 genomes]
rs4323329	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4431452	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4445078	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4452660	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4551178	0.88[EUR][1000 genomes]
rs4605904	0.80[AMR][1000 genomes]
rs4609047	0.81[AMR][1000 genomes]
rs4895706	0.96[CEU][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4896897	0.83[AMR][1000 genomes]
rs6911913	0.80[AMR][1000 genomes]
rs6913861	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7742886	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9322081	0.83[AMR][1000 genomes]
rs9322082	0.96[CEU][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9377038	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9386176	0.86[EUR][1000 genomes]
rs9390445	0.80[AMR][1000 genomes]
rs9399592	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs9403832	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9403834	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9497672	0.80[AMR][1000 genomes]
rs9766272	0.80[AMR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1529021	ULBP3	cis	parietal	SCAN
rs1529021	STXBP5	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147283400-147288800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:147287000-147288800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:147287800-147288000	Enhancers	Fetal Muscle Leg	muscle

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