Variant report

Variant	rs1529013
Chromosome Location	chr6:147289349-147289350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11155492	0.84[CEU][hapmap]
rs1529014	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1529021	0.83[AMR][1000 genomes]
rs1881662	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2328774	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4323329	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4445078	0.81[EUR][1000 genomes]
rs4452660	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4548030	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4895706	0.88[CEU][hapmap]
rs6903137	0.81[ASN][1000 genomes]
rs6913861	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7765349	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9322082	0.84[CEU][hapmap]
rs9377038	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9399592	0.80[CEU][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1529013	STXBP5	cis	cerebellum	SCAN
rs1529013	LTV1	cis	parietal	SCAN
rs1529013	ULBP3	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147288200-147291000	Enhancers	Fetal Heart	heart
2	chr6:147288600-147289400	Enhancers	Colon Smooth Muscle	Colon
3	chr6:147288600-147289800	Enhancers	Osteobl	bone
4	chr6:147288600-147290000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:147288600-147290200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:147288800-147289400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:147288800-147289400	Enhancers	NH-A	brain
8	chr6:147288800-147289800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:147288800-147289800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:147288800-147289800	Enhancers	NHDF-Ad	bronchial
11	chr6:147289000-147289400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:147289000-147289400	Enhancers	NHEK	skin
13	chr6:147289000-147289600	Enhancers	A549	lung
14	chr6:147289000-147289600	Enhancers	HMEC	breast
15	chr6:147289000-147289800	Enhancers	Adipose Nuclei	Adipose
16	chr6:147289000-147289800	Enhancers	Fetal Brain Female	brain
17	chr6:147289200-147289600	Enhancers	HSMM	muscle
18	chr6:147289200-147291200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:147289200-147294200	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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