Variant report

Variant	rs4445078
Chromosome Location	chr6:147286507-147286508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11155492	0.96[CEU][hapmap];0.95[CHB][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11155494	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1406538	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1408577	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1529013	0.81[EUR][1000 genomes]
rs1529014	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1529021	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1881662	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2328774	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4267966	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4323329	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4431452	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4452660	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4551178	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4895706	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5022638	0.84[AMR][1000 genomes]
rs6913861	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7742886	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9322082	0.96[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9377038	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9386176	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9399592	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9403832	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9403834	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147283400-147288800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:147285600-147287000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:147285800-147287000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:147286400-147287000	ZNF genes & repeats	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links