Variant report

Variant	rs1529014
Chromosome Location	chr6:147289375-147289376
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147288556..147291146-chr6:147291708..147294390,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11155492	0.94[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.98[GIH][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11155493	0.85[AMR][1000 genomes]
rs11155494	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12199143	0.82[AMR][1000 genomes]
rs12203394	0.81[AMR][1000 genomes]
rs1408577	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1529013	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1529021	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1881662	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2181942	0.83[AMR][1000 genomes]
rs2328774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34746293	0.82[AMR][1000 genomes]
rs4267966	0.92[EUR][1000 genomes]
rs4323329	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4431452	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4445078	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4452660	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4551178	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4605904	0.82[AMR][1000 genomes]
rs4609047	0.82[AMR][1000 genomes]
rs4895706	1.00[CEU][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4896897	0.84[AMR][1000 genomes]
rs6911913	0.82[AMR][1000 genomes]
rs6913861	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7742886	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7774249	0.81[AMR][1000 genomes]
rs7774926	0.81[AMR][1000 genomes]
rs9322081	0.84[AMR][1000 genomes]
rs9322082	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9377038	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386176	0.89[EUR][1000 genomes]
rs9390445	0.82[AMR][1000 genomes]
rs9399592	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs9403832	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9403834	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9497671	0.81[AMR][1000 genomes]
rs9497672	0.82[AMR][1000 genomes]
rs9497673	0.81[AMR][1000 genomes]
rs9497674	0.81[AMR][1000 genomes]
rs9766272	0.82[AMR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1529014	STXBP5	cis	cerebellum	SCAN
rs1529014	ULBP3	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147288200-147291000	Enhancers	Fetal Heart	heart
2	chr6:147288600-147289400	Enhancers	Colon Smooth Muscle	Colon
3	chr6:147288600-147289800	Enhancers	Osteobl	bone
4	chr6:147288600-147290000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:147288600-147290200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:147288800-147289400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:147288800-147289400	Enhancers	NH-A	brain
8	chr6:147288800-147289800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:147288800-147289800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:147288800-147289800	Enhancers	NHDF-Ad	bronchial
11	chr6:147289000-147289400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:147289000-147289400	Enhancers	NHEK	skin
13	chr6:147289000-147289600	Enhancers	A549	lung
14	chr6:147289000-147289600	Enhancers	HMEC	breast
15	chr6:147289000-147289800	Enhancers	Adipose Nuclei	Adipose
16	chr6:147289000-147289800	Enhancers	Fetal Brain Female	brain
17	chr6:147289200-147289600	Enhancers	HSMM	muscle
18	chr6:147289200-147291200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:147289200-147294200	Weak transcription	Hela-S3	cervix

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