Variant report

Variant	rs4605904
Chromosome Location	chr6:147273323-147273324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10457807	0.82[ASN][1000 genomes]
rs11155493	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11155494	0.81[AMR][1000 genomes]
rs12198271	0.83[ASN][1000 genomes]
rs12199143	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12203394	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209913	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12662569	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1406538	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1529014	0.82[AMR][1000 genomes]
rs1529021	0.80[AMR][1000 genomes]
rs1881661	0.83[ASN][1000 genomes]
rs1881662	0.82[AMR][1000 genomes]
rs1881663	0.82[ASN][1000 genomes]
rs1881665	0.80[ASN][1000 genomes]
rs2181942	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2328774	0.82[AMR][1000 genomes]
rs2328777	0.82[ASN][1000 genomes]
rs34746293	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4323329	0.83[AMR][1000 genomes]
rs4431452	0.80[EUR][1000 genomes]
rs4452660	0.83[AMR][1000 genomes]
rs4551178	0.85[EUR][1000 genomes]
rs4609047	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4895706	0.81[AMR][1000 genomes]
rs4896897	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5022638	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6911913	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6913861	0.80[AMR][1000 genomes]
rs6936461	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6936487	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7742400	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7742886	0.80[AMR][1000 genomes]
rs7774249	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7774926	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322081	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9322084	0.83[ASN][1000 genomes]
rs9373516	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9373518	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9377038	0.82[AMR][1000 genomes]
rs9386176	0.83[EUR][1000 genomes]
rs9390445	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9399592	0.83[EUR][1000 genomes]
rs9403831	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9403832	0.82[AMR][1000 genomes]
rs9403834	0.81[AMR][1000 genomes]
rs9403836	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9485136	0.83[ASN][1000 genomes]
rs9497671	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9497672	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9497673	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9497674	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9497679	0.82[ASN][1000 genomes]
rs9766272	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147265600-147276600	Weak transcription	Pancreas	Pancrea
2	chr6:147268800-147277800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:147272000-147277000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:147272400-147273600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:147272600-147274000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:147272600-147274200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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