Variant report

Variant	rs10457807
Chromosome Location	chr6:147311453-147311454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147300256..147303345-chr6:147310924..147313456,3	K562	blood:
2	chr6:147303393..147305875-chr6:147310244..147312438,2	K562	blood:
3	chr6:147310658..147313330-chr6:147334680..147336294,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12198271	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12199143	0.81[ASN][1000 genomes]
rs12203394	0.82[ASN][1000 genomes]
rs1406538	0.83[ASN][1000 genomes]
rs1529017	0.81[CEU][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap]
rs1529020	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1881661	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1881663	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1881665	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2181942	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs2328775	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2328777	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34746293	0.81[ASN][1000 genomes]
rs4563735	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4605904	0.82[ASN][1000 genomes]
rs4609047	0.81[ASN][1000 genomes]
rs4896898	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs5022638	0.82[ASN][1000 genomes]
rs6570781	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6902235	0.88[AMR][1000 genomes]
rs6911913	0.81[ASN][1000 genomes]
rs6936461	0.81[ASN][1000 genomes]
rs6936487	0.80[ASN][1000 genomes]
rs7741525	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7745042	0.82[JPT][hapmap];0.86[AMR][1000 genomes]
rs7765767	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7774249	0.82[ASN][1000 genomes]
rs7774926	0.82[ASN][1000 genomes]
rs7775644	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9322084	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9322085	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9373518	0.81[ASN][1000 genomes]
rs9377040	0.96[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9386177	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9390445	0.81[ASN][1000 genomes]
rs9390447	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9390449	0.81[CEU][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap]
rs9403836	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs9485136	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9497671	0.81[ASN][1000 genomes]
rs9497672	0.81[ASN][1000 genomes]
rs9497673	0.81[ASN][1000 genomes]
rs9497674	0.81[ASN][1000 genomes]
rs9497675	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9497678	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9497679	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9766272	0.81[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147310200-147313600	Enhancers	Hela-S3	cervix
2	chr6:147310200-147313800	Enhancers	HepG2	liver
3	chr6:147310600-147312000	Enhancers	HSMMtube	muscle
4	chr6:147310600-147313400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:147310800-147313000	Enhancers	Osteobl	bone
6	chr6:147311000-147311600	Enhancers	Placenta Amnion	Placenta Amnion
7	chr6:147311000-147311800	Enhancers	Fetal Heart	heart
8	chr6:147311000-147311800	Enhancers	NHLF	lung
9	chr6:147311000-147312000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:147311200-147311800	Flanking Active TSS	A549	lung
11	chr6:147311200-147312000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:147311200-147312200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:147311400-147311600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:147311400-147311800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:147311400-147312600	Enhancers	NH-A	brain
16	chr6:147311400-147312800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:147311400-147313400	Enhancers	K562	blood
18	chr6:147311400-147313400	Enhancers	NHDF-Ad	bronchial
19	chr6:147311400-147313800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr6:147311400-147321200	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links