Variant report

Variant	rs1529020
Chromosome Location	chr6:147304924-147304925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147303393..147305875-chr6:147310244..147312438,2	K562	blood:
2	chr6:147234520..147236599-chr6:147304755..147307670,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10457807	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12198271	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1881661	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1881663	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2049753	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2049754	0.87[ASN][1000 genomes]
rs2328775	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2328777	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4551178	0.80[ASN][1000 genomes]
rs4563735	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570781	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6902235	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7741525	0.83[AMR][1000 genomes]
rs7745042	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7765767	0.83[AMR][1000 genomes]
rs7775644	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9322084	0.85[EUR][1000 genomes]
rs9322085	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9377040	0.83[AMR][1000 genomes]
rs9390447	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9485136	0.85[EUR][1000 genomes]
rs9497675	0.85[EUR][1000 genomes]
rs9497678	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497679	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147301200-147305400	Enhancers	HepG2	liver
2	chr6:147302200-147305800	Weak transcription	Fetal Intestine Small	intestine
3	chr6:147303200-147305400	Weak transcription	Hela-S3	cervix
4	chr6:147303400-147305600	Weak transcription	K562	blood
5	chr6:147303400-147306000	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links