Variant report

Variant	rs9322084
Chromosome Location	chr6:147305825-147305826
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147303393..147305875-chr6:147310244..147312438,2	K562	blood:
2	chr6:147234520..147236599-chr6:147304755..147307670,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10457807	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12198271	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199143	0.81[ASN][1000 genomes]
rs12203394	0.83[ASN][1000 genomes]
rs1406538	0.83[ASN][1000 genomes]
rs1529017	0.81[CEU][hapmap];0.91[JPT][hapmap]
rs1529020	0.85[EUR][1000 genomes]
rs1881661	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1881663	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1881665	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2181942	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs2328775	0.84[EUR][1000 genomes]
rs2328777	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34746293	0.81[ASN][1000 genomes]
rs4563735	0.81[EUR][1000 genomes]
rs4605904	0.83[ASN][1000 genomes]
rs4609047	0.82[ASN][1000 genomes]
rs4896898	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs5022638	0.82[ASN][1000 genomes]
rs6911913	0.81[ASN][1000 genomes]
rs6936461	0.81[ASN][1000 genomes]
rs6936487	0.80[ASN][1000 genomes]
rs7741525	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7745042	0.83[JPT][hapmap]
rs7765767	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7774249	0.83[ASN][1000 genomes]
rs7774926	0.83[ASN][1000 genomes]
rs7775644	0.85[EUR][1000 genomes]
rs9373518	0.81[ASN][1000 genomes]
rs9377040	0.96[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9386177	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9390445	0.81[ASN][1000 genomes]
rs9390447	0.83[EUR][1000 genomes]
rs9390449	0.81[CEU][hapmap];0.91[JPT][hapmap]
rs9403836	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs9485136	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497671	0.81[ASN][1000 genomes]
rs9497672	0.81[ASN][1000 genomes]
rs9497673	0.81[ASN][1000 genomes]
rs9497674	0.81[ASN][1000 genomes]
rs9497675	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9497678	0.85[EUR][1000 genomes]
rs9497679	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9766272	0.82[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147303400-147306000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:147305200-147306000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:147305200-147306000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:147305400-147306000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:147305400-147306000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:147305400-147306000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:147305400-147306400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:147305400-147306400	Enhancers	Hela-S3	cervix
9	chr6:147305400-147306400	Flanking Active TSS	HepG2	liver
10	chr6:147305400-147306600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:147305600-147306000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:147305600-147306000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:147305600-147306200	Enhancers	HSMMtube	muscle
14	chr6:147305600-147306600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:147305600-147306600	Enhancers	K562	blood
16	chr6:147305800-147306600	Enhancers	Fetal Intestine Large	intestine
17	chr6:147305800-147306600	Active TSS	A549	lung
18	chr6:147305800-147311000	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links