Variant report

Variant	rs7745042
Chromosome Location	chr6:147321387-147321388
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147320987..147322720-chr6:147523518..147525285,2	K562	blood:
2	chr6:147320535..147323169-chr6:147518851..147520491,2	K562	blood:
3	chr6:147320581..147322158-chr6:147325535..147327039,2	K562	blood:
4	chr6:147320621..147322907-chr6:147526530..147528654,2	K562	blood:

Variant related genes	Relation type
ENSG00000233452	Chromatin interaction
ENSG00000164506	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10457807	0.86[AMR][1000 genomes]
rs12198271	0.84[AMR][1000 genomes]
rs1529016	0.82[JPT][hapmap]
rs1529020	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1881661	0.83[AMR][1000 genomes]
rs1881663	0.84[AMR][1000 genomes]
rs1881665	0.84[CHB][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs2049753	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2049754	0.89[ASN][1000 genomes]
rs2328775	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4563735	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4895706	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs6570781	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6902235	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7741525	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7765767	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7775644	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322085	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9377040	0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9386177	0.84[CHB][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs9390447	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9399592	0.91[JPT][hapmap]
rs9399593	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs9497678	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147318600-147321400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:147318600-147321400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:147320600-147322400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:147320800-147321600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:147320800-147321600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:147320800-147321600	Enhancers	K562	blood
7	chr6:147320800-147321800	Enhancers	NHDF-Ad	bronchial
8	chr6:147320800-147322000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:147320800-147323000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:147321000-147321400	Enhancers	Psoas Muscle	Psoas
11	chr6:147321000-147322000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:147321000-147322200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr6:147321000-147322200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr6:147321000-147322200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:147321000-147322600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:147321000-147322600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:147321000-147322600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:147321200-147321600	Weak transcription	A549	lung
19	chr6:147321200-147321800	Enhancers	HSMM	muscle
20	chr6:147321200-147321800	Enhancers	NHLF	lung
21	chr6:147321200-147321800	Enhancers	Osteobl	bone
22	chr6:147321200-147322000	Enhancers	Ovary	ovary
23	chr6:147321200-147322800	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr6:147321200-147322800	Enhancers	HSMMtube	muscle
25	chr6:147321200-147323000	Enhancers	Adipose Nuclei	Adipose

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