Variant report
| Variant | rs9399593 |
|---|---|
| Chromosome Location | chr6:147332567-147332568 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:147316757..147318385-chr6:147332392..147334165,2 | K562 | blood: | |
| 2 | chr6:147330682..147333739-chr6:147335579..147339284,4 | K562 | blood: | |
| 3 | chr6:147331729..147335906-chr6:147523198..147526603,4 | MCF-7 | breast: | |
| 4 | chr6:147312774..147316690-chr6:147332385..147335094,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000164506 | Chromatin interaction |
| ENSG00000233452 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs1112833 | 0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1529015 | 0.89[ASN][1000 genomes] |
| rs1529016 | 0.81[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs4143745 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4548030 | 0.82[AFR][1000 genomes] |
| rs4896900 | 0.92[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4896901 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4896902 | 0.89[ASN][1000 genomes] |
| rs6570787 | 0.89[ASN][1000 genomes] |
| rs7740816 | 0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7745042 | 0.91[CHB][hapmap];0.82[JPT][hapmap] |
| rs7753478 | 0.87[ASN][1000 genomes] |
| rs7772651 | 0.84[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9377040 | 0.82[JPT][hapmap] |
| rs9390448 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv13776 | chr6:147324012-147334530 | Weak transcription Enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv2761057 | chr6:147324938-147333251 | Weak transcription Enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
