Variant report

Variant	rs6902235
Chromosome Location	chr6:147315296-147315297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147312774..147316690-chr6:147332385..147335094,3	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10457807	0.88[AMR][1000 genomes]
rs12198271	0.86[AMR][1000 genomes]
rs1529016	0.82[JPT][hapmap]
rs1529020	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1881661	0.85[AMR][1000 genomes]
rs1881663	0.86[AMR][1000 genomes]
rs1881665	0.83[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs2049753	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2049754	0.87[ASN][1000 genomes]
rs2328775	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4563735	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4895706	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs6570781	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7741525	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7745042	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7765767	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7775644	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9322085	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9377040	0.82[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9386177	0.83[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs9390447	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9399592	0.91[JPT][hapmap]
rs9399593	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs9497678	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9497679	0.82[AMR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147311400-147321200	Weak transcription	HSMM	muscle
2	chr6:147311800-147318000	Weak transcription	NHLF	lung
3	chr6:147312600-147318000	Weak transcription	NH-A	brain
4	chr6:147312600-147318400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:147312600-147321000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:147312800-147318000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:147312800-147318200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:147313000-147318000	Weak transcription	Osteobl	bone
9	chr6:147313400-147318000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:147313400-147318000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:147313400-147318200	Weak transcription	NHDF-Ad	bronchial
12	chr6:147313400-147320800	Weak transcription	K562	blood
13	chr6:147313600-147318000	Weak transcription	A549	lung
14	chr6:147313800-147318400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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