Variant report

Variant	rs7752008
Chromosome Location	chr6:69824641-69824642
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs6455308	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs728083	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446091	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9446095	1.00[EUR][1000 genomes]
rs9454685	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9454686	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9454688	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9454691	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9454692	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9454693	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9454698	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9454699	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3849	chr6:69818249-69825384	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69821400-69826400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69821400-69832200	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:69822000-69831400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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