Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1600874	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6455308	0.90[AMR][1000 genomes]
rs728083	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7746793	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7752008	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9294819	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9446091	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9446095	0.99[EUR][1000 genomes]
rs9446098	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9454685	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9454686	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9454688	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9454691	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9454692	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9454693	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9454698	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9454702	0.82[AFR][1000 genomes]
rs9454704	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9454705	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9454708	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2754259	chr6:69825681-69858930	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69821400-69832200	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:69831400-69831800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
3	chr6:69831400-69832200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

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