Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10485253	0.90[YRI][hapmap]
rs12191480	0.85[CEU][hapmap]
rs12209170	0.85[CEU][hapmap];0.90[YRI][hapmap]
rs12215081	0.85[CEU][hapmap]
rs1415033	1.00[CEU][hapmap]
rs1600874	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1619465	0.82[YRI][hapmap]
rs16900641	0.81[YRI][hapmap]
rs17747612	0.85[CEU][hapmap]
rs1858395	1.00[YRI][hapmap]
rs3799070	0.85[CEU][hapmap]
rs6916250	1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs6937300	0.80[YRI][hapmap]
rs728083	0.81[AFR][1000 genomes]
rs7746793	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7759129	0.83[YRI][hapmap]
rs7761948	0.93[CEU][hapmap]
rs7770947	0.92[CEU][hapmap]
rs9294819	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9294824	0.90[YRI][hapmap]
rs9446086	0.93[CEU][hapmap]
rs9446087	0.93[CEU][hapmap]
rs9446091	0.93[CEU][hapmap]
rs9446098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446102	1.00[YRI][hapmap]
rs9454686	0.93[CEU][hapmap]
rs9454688	0.93[CEU][hapmap]
rs9454693	0.93[CEU][hapmap]
rs9454698	0.90[AFR][1000 genomes]
rs9454699	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9454702	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9454704	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9454708	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2754259	chr6:69825681-69858930	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69850000-69852200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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