Variant report

Variant	rs9446102
Chromosome Location	chr6:69875273-69875274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10485253	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs12209170	0.81[YRI][hapmap];0.88[AFR][1000 genomes]
rs12529585	1.00[EUR][1000 genomes]
rs16900653	1.00[EUR][1000 genomes]
rs1858395	0.89[YRI][hapmap]
rs55638103	1.00[EUR][1000 genomes]
rs6916250	0.88[YRI][hapmap]
rs6916748	1.00[EUR][1000 genomes]
rs6937300	1.00[EUR][1000 genomes]
rs73745998	1.00[EUR][1000 genomes]
rs73746002	1.00[EUR][1000 genomes]
rs7746793	0.89[YRI][hapmap]
rs7759129	0.89[YRI][hapmap]
rs9294819	0.88[YRI][hapmap]
rs9294824	0.82[YRI][hapmap]
rs9454704	0.89[YRI][hapmap]
rs9454705	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv526130	chr6:69851816-69922327	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1029637	chr6:69855697-69916758	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886138	chr6:69865641-69924282	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69860800-69876200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69872800-69875400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:69873800-69875400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr6:69874200-69877600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:69874600-69875400	Weak transcription	Brain Anterior Caudate	brain
6	chr6:69874600-69876400	Weak transcription	Brain Angular Gyrus	brain
7	chr6:69874800-69875400	Enhancers	Brain Hippocampus Middle	brain
8	chr6:69875000-69876000	Weak transcription	Brain Germinal Matrix	brain
9	chr6:69875000-69876400	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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