Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12209170	0.82[YRI][hapmap]
rs12215081	0.90[CEU][hapmap]
rs1415033	0.94[CEU][hapmap]
rs1600874	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1619465	0.89[YRI][hapmap]
rs1858395	1.00[YRI][hapmap]
rs3799047	0.85[YRI][hapmap]
rs6916250	1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs728083	0.81[AFR][1000 genomes]
rs7746793	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7761948	0.95[CEU][hapmap]
rs7770947	0.94[CEU][hapmap]
rs779486	0.85[YRI][hapmap]
rs9294819	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9294824	0.94[YRI][hapmap]
rs9446086	0.95[CEU][hapmap]
rs9446087	0.95[CEU][hapmap]
rs9446091	0.95[CEU][hapmap]
rs9446098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9446102	0.89[YRI][hapmap]
rs9454686	0.95[CEU][hapmap]
rs9454688	0.95[CEU][hapmap]
rs9454693	0.95[CEU][hapmap]
rs9454698	0.90[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs9454699	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9454702	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9454705	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9454708	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2754259	chr6:69825681-69858930	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69835400-69838200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:69837800-69838600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69837800-69839200	Enhancers	Fetal Brain Male	brain
4	chr6:69838000-69838600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:69838000-69839400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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