Variant report

Variant	rs9454693
Chromosome Location	chr6:69808955-69808956
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12215081	0.95[CEU][hapmap];0.87[YRI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12527597	1.00[JPT][hapmap]
rs1415033	0.94[CEU][hapmap]
rs6455308	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs728083	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7746793	0.95[CEU][hapmap]
rs7752008	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7761948	1.00[CEU][hapmap];0.91[TSI][hapmap];0.88[YRI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7770947	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs779453	1.00[CHD][hapmap]
rs9294819	0.95[CEU][hapmap];0.93[GIH][hapmap];0.94[MEX][hapmap]
rs9446086	1.00[CEU][hapmap];0.84[TSI][hapmap];0.88[YRI][hapmap]
rs9446087	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs9446090	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9446091	1.00[CEU][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446095	0.83[EUR][1000 genomes]
rs9454685	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9454686	1.00[CEU][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9454688	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9454691	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9454692	0.83[CEU][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9454698	0.83[AMR][1000 genomes]
rs9454699	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9454704	0.95[CEU][hapmap]
rs9454705	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69799400-69820800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:69800800-69820600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69807400-69812200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:69808200-69809000	Weak transcription	Aorta	Aorta
5	chr6:69808200-69809200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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