Variant report

Variant	rs12215081
Chromosome Location	chr6:69772394-69772395
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10455680	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1415033	0.88[CEU][hapmap]
rs6455308	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7746793	0.89[CEU][hapmap]
rs7761948	0.95[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7770947	0.94[CEU][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9294819	0.89[CEU][hapmap]
rs9446086	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs9446087	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs9446090	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446091	0.95[CEU][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9454685	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9454686	0.95[CEU][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9454688	1.00[CEU][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9454691	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9454692	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9454693	0.95[CEU][hapmap];0.87[YRI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9454704	0.90[CEU][hapmap]
rs9454705	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv463148	chr6:69746054-69781786	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv603632	chr6:69746054-69781786	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv603633	chr6:69748600-69794079	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv3367046	chr6:69771492-69772889	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69753600-69794800	Weak transcription	Fetal Lung	lung
2	chr6:69760400-69800200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69770000-69775000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:69771400-69776400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:69772200-69772400	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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