Variant report

Variant	rs9454691
Chromosome Location	chr6:69807659-69807660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12215081	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3757050	0.81[AFR][1000 genomes]
rs6455308	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs728083	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7752008	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7761948	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7770947	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9446090	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9446091	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446095	0.83[EUR][1000 genomes]
rs9454685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9454686	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9454688	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9454692	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9454693	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9454698	0.85[AMR][1000 genomes]
rs9454699	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69799400-69820800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:69800800-69820600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69805400-69808200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:69806800-69808000	Weak transcription	Aorta	Aorta
5	chr6:69807400-69812200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links