Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12215081	0.95[CEU][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1415033	0.94[CEU][hapmap]
rs6455308	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs728083	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7746793	0.95[CEU][hapmap]
rs7752008	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7761948	1.00[CEU][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7770947	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9294819	0.95[CEU][hapmap]
rs9446086	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs9446087	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs9446090	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9446091	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446095	0.83[EUR][1000 genomes]
rs9454685	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9454688	1.00[CEU][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9454691	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9454692	0.83[CEU][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9454693	1.00[CEU][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9454698	0.85[AMR][1000 genomes]
rs9454699	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9454704	0.95[CEU][hapmap]
rs9454705	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv603633	chr6:69748600-69794079	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69753600-69794800	Weak transcription	Fetal Lung	lung
2	chr6:69760400-69800200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69784000-69797800	Weak transcription	Brain Angular Gyrus	brain

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