Variant report

Variant	rs9446087
Chromosome Location	chr6:69732444-69732445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12215081	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs1415033	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1415034	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35230563	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7746793	0.94[CEU][hapmap]
rs7761948	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7770947	1.00[CEU][hapmap];0.85[AFR][1000 genomes]
rs9294819	0.95[CEU][hapmap]
rs9446086	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9446091	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs9454686	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs9454688	1.00[CEU][hapmap];0.93[YRI][hapmap]
rs9454692	0.82[CEU][hapmap]
rs9454693	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs9454704	0.95[CEU][hapmap]
rs9454705	0.93[CEU][hapmap]
rs947220	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
2	chr6:69701000-69737600	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:69702400-69737600	Weak transcription	Brain Angular Gyrus	brain
4	chr6:69720400-69758600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:69721600-69752200	Weak transcription	Fetal Lung	lung
6	chr6:69723400-69742600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:69729400-69759400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:69729600-69732600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:69729800-69733200	Weak transcription	Osteobl	bone
10	chr6:69730000-69732600	Weak transcription	NH-A	brain
11	chr6:69730000-69732800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:69730800-69732600	Weak transcription	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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