Variant report

Variant	rs9446090
Chromosome Location	chr6:69783065-69783066
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10455680	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12215081	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6455308	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7761948	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7770947	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9446091	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9454685	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9454686	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9454688	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9454691	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9454692	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9454693	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv603633	chr6:69748600-69794079	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69753600-69794800	Weak transcription	Fetal Lung	lung
2	chr6:69760400-69800200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69783000-69783600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links