Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12198653	1.00[CHB][hapmap]
rs12209170	1.00[ASW][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];0.82[YRI][hapmap]
rs1600874	0.81[EUR][1000 genomes]
rs1619465	0.82[LWK][hapmap];0.89[YRI][hapmap]
rs1858395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1858396	1.00[CHB][hapmap]
rs3799047	0.94[YRI][hapmap]
rs3799052	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs3799070	1.00[CHB][hapmap];0.92[GIH][hapmap]
rs3799077	0.88[GIH][hapmap]
rs4706883	1.00[ASN][1000 genomes]
rs6915681	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7746793	1.00[YRI][hapmap]
rs779486	0.94[YRI][hapmap]
rs9294819	1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs9294824	0.82[LWK][hapmap];0.94[YRI][hapmap]
rs9446098	0.81[EUR][1000 genomes]
rs9446102	0.88[YRI][hapmap]
rs9454704	1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs9454705	1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs9454708	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv526130	chr6:69851816-69922327	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1029637	chr6:69855697-69916758	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886138	chr6:69865641-69924282	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69876800-69889800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69877000-69891000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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