Variant report

Variant	rs7754715
Chromosome Location	chr6:79544058-79544059
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11967173	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12529043	1.00[CEU][hapmap]
rs1415862	0.87[CEU][hapmap]
rs1415863	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1538234	0.81[EUR][1000 genomes]
rs1890230	0.81[EUR][1000 genomes]
rs28811946	0.87[EUR][1000 genomes]
rs4706748	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4706749	0.81[EUR][1000 genomes]
rs56118785	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6923327	1.00[CEU][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6940635	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6941107	0.85[EUR][1000 genomes]
rs73764080	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73764089	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7747479	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7758407	0.87[EUR][1000 genomes]
rs7775074	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7776322	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1839807	chr6:79532610-79606615	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79542000-79546400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:79542800-79546200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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