Variant report

Variant	rs73764089
Chromosome Location	chr6:79648796-79648797
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79647755..79649635-chr6:79649831..79651626,2	K562	blood:
2	chr6:79647356..79649255-chr6:79650126..79652701,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11967173	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1413967	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1415861	0.88[AMR][1000 genomes]
rs1415862	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1415863	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1538234	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1890230	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28811946	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4547969	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4706748	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4706749	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56118785	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58047896	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6454094	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6454095	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6900076	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6906655	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6916942	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6918296	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6923327	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6929315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940635	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6941107	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73764080	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7739298	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7747479	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7754715	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7758407	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7775074	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7776322	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9343862	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9361485	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv3362036	chr6:79646533-79650631	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79639600-79650400	Weak transcription	HSMMtube	muscle
2	chr6:79640400-79655000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:79640600-79648800	Weak transcription	Fetal Kidney	kidney
4	chr6:79641600-79650200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:79642400-79649400	Weak transcription	Adipose Nuclei	Adipose
6	chr6:79642400-79650000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr6:79642400-79653000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:79642600-79649400	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:79642600-79649400	Weak transcription	Osteobl	bone
10	chr6:79642600-79658200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:79642800-79649000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:79642800-79649400	Weak transcription	Fetal Lung	lung
13	chr6:79642800-79650400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:79643200-79648800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:79643200-79649000	Weak transcription	GM12878-XiMat	blood
16	chr6:79643200-79649400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:79643200-79653000	Weak transcription	HMEC	breast
18	chr6:79643600-79650200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr6:79643600-79651600	Weak transcription	Primary T cells from cord blood	blood
20	chr6:79643800-79648800	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr6:79643800-79648800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr6:79643800-79649000	Weak transcription	Primary B cells from cord blood	blood
23	chr6:79644000-79649400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:79644000-79658600	Strong transcription	Dnd41	blood
25	chr6:79644400-79648800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr6:79644400-79648800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:79644400-79650200	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr6:79644400-79650400	Weak transcription	Fetal Brain Male	brain
29	chr6:79644400-79651600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr6:79644600-79649000	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr6:79644600-79649400	Weak transcription	Fetal Intestine Large	intestine
32	chr6:79644600-79649600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr6:79644600-79654000	Weak transcription	Brain Substantia Nigra	brain
34	chr6:79644800-79655400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr6:79645000-79649600	Weak transcription	Fetal Thymus	thymus
36	chr6:79645000-79657400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:79645200-79648800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr6:79645600-79653200	Weak transcription	Rectal Smooth Muscle	rectum
39	chr6:79645600-79658200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:79645600-79658600	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr6:79645800-79648800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr6:79645800-79650400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr6:79646000-79650200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:79646000-79652200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr6:79646000-79658000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr6:79646000-79658400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr6:79646200-79649600	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr6:79646200-79651200	Strong transcription	HSMM	muscle
49	chr6:79646200-79658200	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr6:79646200-79658200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links