Variant report

Variant	rs6916942
Chromosome Location	chr6:79850427-79850428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12529043	0.87[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs1413967	0.84[ASW][hapmap];0.87[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1415861	0.84[ASW][hapmap];0.87[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes]
rs1415862	0.82[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes]
rs1415863	0.87[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1538234	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1890230	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4547969	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4706748	0.87[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4706749	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6454094	0.84[ASW][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6454095	0.87[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6900076	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6906655	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6918296	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6929315	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6940635	0.87[CEU][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73764089	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7739298	0.87[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7747479	0.84[ASW][hapmap];0.87[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7756903	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7775074	0.87[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9343862	0.87[CEU][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9361485	0.87[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv830706	chr6:79825910-79994878	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79846200-79856400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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