Variant report
| Variant | rs6900076 |
|---|---|
| Chromosome Location | chr6:79849411-79849412 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1413967 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1415861 | 0.85[AMR][1000 genomes] |
| rs1415862 | 0.88[AMR][1000 genomes] |
| rs1415863 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1538234 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1890230 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4547969 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4706748 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4706749 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs58047896 | 0.93[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6454094 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6454095 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6906655 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6916942 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6918296 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs6929315 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6940635 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs73764089 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7739298 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7747479 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7756903 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7775074 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs9343862 | 0.93[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs9361485 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv518477 | chr6:79700159-79850427 | Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv830706 | chr6:79825910-79994878 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:79846200-79856400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
