Variant report

Variant	rs6918296
Chromosome Location	chr6:79740920-79740921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79739952..79742427-chr6:79786600..79788956,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146247	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11967173	0.85[EUR][1000 genomes]
rs1413967	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1415862	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415863	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1538234	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890230	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28811946	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4547969	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4706748	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706749	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56118785	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58047896	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6454094	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6454095	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900076	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6906655	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6916942	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6923327	0.85[EUR][1000 genomes]
rs6929315	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6940635	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6941107	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73764080	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73764089	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7739298	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747479	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7756903	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7758407	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775074	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776322	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9343862	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9361485	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79687200-79741600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr6:79687600-79775000	Strong transcription	Dnd41	blood
3	chr6:79688400-79742800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:79688400-79744400	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:79704600-79786600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:79706600-79747800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:79707400-79755800	Weak transcription	Pancreas	Pancrea
8	chr6:79707400-79786000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:79707400-79786600	Weak transcription	Esophagus	oesophagus
10	chr6:79707800-79745200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:79708200-79741800	Weak transcription	A549	lung
12	chr6:79708800-79769600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:79710800-79774600	Weak transcription	Psoas Muscle	Psoas
14	chr6:79712200-79741600	Weak transcription	HSMMtube	muscle
15	chr6:79713600-79747000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr6:79714600-79747000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr6:79717200-79765600	Weak transcription	Colon Smooth Muscle	Colon
18	chr6:79724600-79765200	Weak transcription	Stomach Mucosa	stomach
19	chr6:79725200-79747000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:79726000-79751400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr6:79726000-79765800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:79726600-79747000	Weak transcription	Fetal Brain Female	brain
23	chr6:79726600-79751800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:79726600-79766200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr6:79726800-79750200	Weak transcription	Hela-S3	cervix
26	chr6:79727000-79767800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr6:79727600-79750200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr6:79727600-79761800	Weak transcription	Fetal Brain Male	brain
29	chr6:79728000-79753000	Weak transcription	Brain Germinal Matrix	brain
30	chr6:79728400-79741200	Weak transcription	NH-A	brain
31	chr6:79728600-79750200	Weak transcription	Fetal Stomach	stomach
32	chr6:79730000-79786600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:79730600-79776600	Weak transcription	Aorta	Aorta
34	chr6:79731800-79743400	Strong transcription	Primary B cells from cord blood	blood
35	chr6:79732200-79744600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:79732200-79774600	Weak transcription	Gastric	stomach
37	chr6:79732400-79756000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr6:79733000-79741800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr6:79733000-79746800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:79733000-79747200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:79733000-79761800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:79733000-79765800	Weak transcription	Lung	lung
43	chr6:79733200-79741000	Weak transcription	HepG2	liver
44	chr6:79733200-79741800	Weak transcription	Primary T cells from cord blood	blood
45	chr6:79733200-79743000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr6:79733200-79743000	Weak transcription	NHEK	skin
47	chr6:79733200-79746200	Weak transcription	Fetal Lung	lung
48	chr6:79733200-79746600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:79733200-79747000	Weak transcription	Brain Cingulate Gyrus	brain
50	chr6:79733200-79747800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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